8RSN | pdb_00008rsn

macrodomain-fused SirTM (Mfs1) from Fusarium oxysporum f. sp. cubense race 1

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
in silico model	Other		CRANK2-processed model

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293.15	200 mM KSC 100 mM BisTris-propane pH 7.5 20% (w/v) PEG3350

Crystal Properties
Matthews coefficient	Solvent content
2.32	47.08

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 61.739	α = 90
b = 135.089	β = 90
c = 147.625	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2017-06-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	1.28229	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.219	147.6	100	0.999	13.2	11.9		61954

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.22	2.28	100		0.512	1.4	6.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.219	99.859	61809	3030	99.787	0.206	0.2031	0.2051	0.2532	0.251	55.321

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.413			0.8		-0.387

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_other_3_deg	19.969
r_dihedral_angle_3_deg	17.779
r_dihedral_angle_6_deg	14.935
r_lrange_it	10.829
r_lrange_other	10.826
r_dihedral_angle_2_deg	10.004
r_scangle_it	8.219
r_scangle_other	8.217
r_mcangle_it	7.408
r_mcangle_other	7.408
r_dihedral_angle_1_deg	6.941
r_scbond_it	5.656
r_scbond_other	5.656
r_mcbond_it	5.029
r_mcbond_other	4.988
r_angle_refined_deg	1.751
r_angle_other_deg	0.554
r_nbd_other	0.231
r_nbd_refined	0.217
r_symmetry_nbd_other	0.199
r_symmetry_xyhbond_nbd_refined	0.189
r_nbtor_refined	0.181
r_symmetry_nbd_refined	0.174
r_xyhbond_nbd_refined	0.147
r_ncsr_local_group_1	0.095
r_symmetry_nbtor_other	0.084
r_chiral_restr	0.076
r_chiral_restr_other	0.023
r_symmetry_xyhbond_nbd_other	0.013
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8313
Nucleic Acid Atoms
Solvent Atoms	252
Heterogen Atoms	63

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing