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macrodomain-fused SirTM (Mfs1) from Fusarium oxysporum f. sp. cubense race 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other CRANK2-processed model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 200 mM KSC
100 mM BisTris-propane pH 7.5
20% (w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 2.32 47.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.739 α = 90 b = 135.089 β = 90 c = 147.625 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.28229 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.219 147.6 100 0.999 13.2 11.9 61954
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.22 2.28 100 0.512 1.4 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.219 99.859 61809 3030 99.787 0.206 0.2031 0.2051 0.2532 0.251 55.321
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.413 0.8 -0.387
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 19.969 r_dihedral_angle_3_deg 17.779 r_dihedral_angle_6_deg 14.935 r_lrange_it 10.829 r_lrange_other 10.826 r_dihedral_angle_2_deg 10.004 r_scangle_it 8.219 r_scangle_other 8.217 r_mcangle_it 7.408 r_mcangle_other 7.408
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 19.969 r_dihedral_angle_3_deg 17.779 r_dihedral_angle_6_deg 14.935 r_lrange_it 10.829 r_lrange_other 10.826 r_dihedral_angle_2_deg 10.004 r_scangle_it 8.219 r_scangle_other 8.217 r_mcangle_it 7.408 r_mcangle_other 7.408 r_dihedral_angle_1_deg 6.941 r_scbond_it 5.656 r_scbond_other 5.656 r_mcbond_it 5.029 r_mcbond_other 4.988 r_angle_refined_deg 1.751 r_angle_other_deg 0.554 r_nbd_other 0.231 r_nbd_refined 0.217 r_symmetry_nbd_other 0.199 r_symmetry_xyhbond_nbd_refined 0.189 r_nbtor_refined 0.181 r_symmetry_nbd_refined 0.174 r_xyhbond_nbd_refined 0.147 r_ncsr_local_group_1 0.095 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.076 r_chiral_restr_other 0.023 r_symmetry_xyhbond_nbd_other 0.013 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8313 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing