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Galectin-3 with a small molecule inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other In-house unliganded structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 2.1 M DL-Malic acid pH 7.0
Crystal Properties Matthews coefficient Solvent content 1.96 37.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.518 α = 90 b = 57.531 β = 90 c = 62.116 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2021-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.208 42.209 98.9 0.999 0.083 2.94 72732
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.208 1.28 2.2 0.185 0.58
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.208 42.208 38490 1906 99.427 0.158 0.1561 0.1658 0.1882 0.1944 16.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.757 0.217 1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.128 r_lrange_it 12.927 r_lrange_other 12.088 r_dihedral_angle_3_deg 11.947 r_scangle_it 9.298 r_scangle_other 9.29 r_dihedral_angle_1_deg 7.279 r_scbond_it 6.454 r_scbond_other 6.441 r_mcangle_other 6.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.128 r_lrange_it 12.927 r_lrange_other 12.088 r_dihedral_angle_3_deg 11.947 r_scangle_it 9.298 r_scangle_other 9.29 r_dihedral_angle_1_deg 7.279 r_scbond_it 6.454 r_scbond_other 6.441 r_mcangle_other 6.368 r_mcangle_it 6.367 r_dihedral_angle_2_deg 6.343 r_mcbond_it 4.503 r_mcbond_other 4.492 r_rigid_bond_restr 3.711 r_angle_refined_deg 1.65 r_angle_other_deg 0.631 r_nbd_refined 0.21 r_symmetry_nbd_other 0.195 r_symmetry_nbd_refined 0.189 r_nbtor_refined 0.171 r_symmetry_xyhbond_nbd_refined 0.171 r_xyhbond_nbd_refined 0.155 r_nbd_other 0.154 r_chiral_restr 0.092 r_symmetry_nbtor_other 0.085 r_chiral_restr_other 0.017 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1105 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction XSCALE data scaling PHASER phasing