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Erk2 MAP kinase R65S+T188D - AMP-PNP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4S32
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M sodium hepes pH=7, 4% v/v PEG 400 and 2M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.27 45.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.663 α = 90 b = 70.05 β = 109.25 c = 59.605 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2022-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.9655 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 43.87 97.1 0.97 12.7 2.5 40432
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.5 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 43.87 38270 2009 96.73 0.19903 0.19734 0.2062 0.23071 0.2359 RANDOM 30.917
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.071 r_dihedral_angle_4_deg 23.717 r_dihedral_angle_3_deg 15.713 r_long_range_B_refined 7.587 r_long_range_B_other 7.586 r_dihedral_angle_1_deg 6.924 r_scangle_other 5.789 r_mcangle_it 4.04 r_mcangle_other 4.039 r_scbond_other 3.769
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.071 r_dihedral_angle_4_deg 23.717 r_dihedral_angle_3_deg 15.713 r_long_range_B_refined 7.587 r_long_range_B_other 7.586 r_dihedral_angle_1_deg 6.924 r_scangle_other 5.789 r_mcangle_it 4.04 r_mcangle_other 4.039 r_scbond_other 3.769 r_scbond_it 3.768 r_mcbond_it 2.896 r_mcbond_other 2.896 r_angle_refined_deg 1.689 r_angle_other_deg 1.379 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2798 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing