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hJAK3 in complex with LAW931 inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YVJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 15-30 % (w/v) PEG3350
0.20 M MgCl2
0.10 M Bis-Tris pH 5.5- 6.25
Crystal Properties Matthews coefficient Solvent content 2.66 53.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.093 α = 86.31 b = 69.1 β = 83.62 c = 93.292 γ = 81.58
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2008-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.72 46.73 95.2 0.109 8.55 2.2 35804
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.72 3.08 95.2 0.437 2.49 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.72 46.73 34728 1075 100 0.2483 0.24712 0.2501 0.28665 0.2909 RANDOM 46.875
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.08 1.64 0.15 4.79 4.16 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.804 r_dihedral_angle_3_deg 16.049 r_dihedral_angle_4_deg 15.209 r_dihedral_angle_1_deg 4.894 r_scangle_it 2.164 r_scbond_it 1.451 r_mcangle_it 1.17 r_mcbond_it 0.989 r_angle_refined_deg 0.953 r_angle_other_deg 0.801
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.804 r_dihedral_angle_3_deg 16.049 r_dihedral_angle_4_deg 15.209 r_dihedral_angle_1_deg 4.894 r_scangle_it 2.164 r_scbond_it 1.451 r_mcangle_it 1.17 r_mcbond_it 0.989 r_angle_refined_deg 0.953 r_angle_other_deg 0.801 r_symmetry_hbond_refined 0.201 r_nbd_refined 0.199 r_nbtor_refined 0.175 r_symmetry_vdw_other 0.165 r_mcbond_other 0.161 r_nbd_other 0.16 r_xyhbond_nbd_refined 0.132 r_symmetry_vdw_refined 0.079 r_nbtor_other 0.078 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8386 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing