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X-ray structure of blue laccase BP76 from the termite Neocapritermes taracua
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 291 100 mM sodium acetate pH 4.5, 2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 4.5 73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.5 α = 90 b = 163.5 β = 90 c = 89.21 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-08-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 1.362, 0.918 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 47.2 99.7 0.135 0.143 0.998 12.12 10 126421
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 0.821 0.864 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 47.2 123978 3179 99.87 0.13253 0.13221 0.1462 0.14484 0.1586 RANDOM 25.842
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 0.52 1.04 -3.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.893 r_long_range_B_other 9.74 r_long_range_B_refined 9.739 r_dihedral_angle_1_deg 7.319 r_scangle_other 5.414 r_scbond_it 3.737 r_scbond_other 3.736 r_dihedral_angle_2_deg 3.381 r_mcangle_it 3.084 r_mcangle_other 3.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.893 r_long_range_B_other 9.74 r_long_range_B_refined 9.739 r_dihedral_angle_1_deg 7.319 r_scangle_other 5.414 r_scbond_it 3.737 r_scbond_other 3.736 r_dihedral_angle_2_deg 3.381 r_mcangle_it 3.084 r_mcangle_other 3.083 r_angle_other_deg 2.843 r_mcbond_it 2.194 r_mcbond_other 2.188 r_angle_refined_deg 1.585 r_chiral_restr 0.089 r_gen_planes_other 0.052 r_gen_planes_refined 0.017 r_bond_refined_d 0.016 r_bond_other_d 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4897 Nucleic Acid Atoms Solvent Atoms 1009 Heterogen Atoms 323
Software Software Software Name Purpose REFMAC refinement XDS data scaling SHELX phasing XDS data reduction