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MutSbeta bound to compound CHDI-00898647 in the canonical DNA-mismatch bound form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3THY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.1 MES pH 6.5; 0.2 M NH4 Acetate; 20-25 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.51 50.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.473 α = 109.331 b = 104.096 β = 91.808 c = 122.016 γ = 109.505
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 16M 2022-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.783 113.659 92 0.071 0.062 0.98 9 2.3 79309
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.783 3.008 57.7 0.888 0.643 0.353 1.5 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.783 113.659 79308 3915 72.825 0.225 0.2226 0.2242 0.2657 0.2651 60.459
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.266 -0.193 0.096 -0.035 -0.067 0.356
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.004 r_dihedral_angle_4_deg 15.213 r_dihedral_angle_3_deg 14.546 r_dihedral_angle_6_deg 12.934 r_lrange_it 6.384 r_lrange_other 6.383 r_dihedral_angle_1_deg 6.241 r_dihedral_angle_other_3_deg 6.018 r_mcangle_it 4.053 r_mcangle_other 4.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.004 r_dihedral_angle_4_deg 15.213 r_dihedral_angle_3_deg 14.546 r_dihedral_angle_6_deg 12.934 r_lrange_it 6.384 r_lrange_other 6.383 r_dihedral_angle_1_deg 6.241 r_dihedral_angle_other_3_deg 6.018 r_mcangle_it 4.053 r_mcangle_other 4.053 r_scangle_it 3.434 r_scangle_other 3.434 r_mcbond_it 2.352 r_mcbond_other 2.352 r_scbond_it 1.95 r_scbond_other 1.95 r_angle_refined_deg 1.297 r_angle_other_deg 1.112 r_nbtor_refined 0.148 r_nbd_refined 0.146 r_symmetry_xyhbond_nbd_refined 0.144 r_symmetry_nbd_other 0.142 r_nbd_other 0.138 r_symmetry_nbd_refined 0.125 r_xyhbond_nbd_refined 0.099 r_ext_dist_refined_d 0.073 r_symmetry_nbtor_other 0.072 r_symmetry_xyhbond_nbd_other 0.052 r_chiral_restr 0.047 r_ncsr_local_group_3 0.041 r_ncsr_local_group_4 0.037 r_ncsr_local_group_1 0.035 r_ncsr_local_group_2 0.03 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26824 Nucleic Acid Atoms 1819 Solvent Atoms 117 Heterogen Atoms 176
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling PHASER phasing