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Complex of rice blast (Magnaporthe oryzae) effector protein PWL2 with the HMA domain of OsHIPP43 from rice (Oryza sativa)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.2 M Potassium sodium tartrate tetrahydrate, 0.1 M Tris 8.0
Crystal Properties Matthews coefficient Solvent content 29.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.161 α = 90 b = 63.161 β = 90 c = 198.208 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 54.76 100 0.086 0.087 0.014 1 31.1 36.9 22749
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 100 1.676 1.698 0.271 0.915 38.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 54.76 21509 1134 99.94 0.1897 0.18835 0.1971 0.2151 0.2227 RANDOM 38.789
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.15 0.31 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.78 r_dihedral_angle_2_deg 8.786 r_long_range_B_refined 7.898 r_long_range_B_other 7.84 r_dihedral_angle_1_deg 6.514 r_scangle_other 3.814 r_mcangle_it 2.469 r_mcangle_other 2.468 r_scbond_it 2.451 r_scbond_other 2.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.78 r_dihedral_angle_2_deg 8.786 r_long_range_B_refined 7.898 r_long_range_B_other 7.84 r_dihedral_angle_1_deg 6.514 r_scangle_other 3.814 r_mcangle_it 2.469 r_mcangle_other 2.468 r_scbond_it 2.451 r_scbond_other 2.45 r_mcbond_it 1.677 r_mcbond_other 1.673 r_angle_refined_deg 1.619 r_angle_other_deg 0.571 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1465 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling CRANK2 phasing