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Polysaccharide lyase BtPL33HA (BT4410) Y291A with HAdp4 collected at 1.22 A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Solved structure, upublished
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 20 % PEG 6000
0.1 M MES pH 6.0
0.1 M Ammonium chloride
20 mg/ml
Crystal Properties Matthews coefficient Solvent content 2.54 51.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.633 α = 90 b = 137.347 β = 90 c = 202.832 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 1.22 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 60.66 100 0.999 19.9 6.6 115460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.95 0.824 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.92 60.66 115358 5759 99.99 0.18 0.179 0.1792 0.2083 0.2089 34.777
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.428 -0.163 -0.265
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.485 r_dihedral_angle_3_deg 14.29 r_dihedral_angle_2_deg 11.59 r_dihedral_angle_1_deg 6.482 r_lrange_it 6.284 r_lrange_other 6.284 r_scangle_it 4.793 r_scangle_other 4.793 r_scbond_it 3.219 r_scbond_other 3.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.485 r_dihedral_angle_3_deg 14.29 r_dihedral_angle_2_deg 11.59 r_dihedral_angle_1_deg 6.482 r_lrange_it 6.284 r_lrange_other 6.284 r_scangle_it 4.793 r_scangle_other 4.793 r_scbond_it 3.219 r_scbond_other 3.219 r_mcangle_it 2.905 r_mcangle_other 2.905 r_mcbond_it 2.117 r_mcbond_other 2.117 r_angle_refined_deg 1.725 r_angle_other_deg 0.597 r_nbd_refined 0.225 r_nbd_other 0.215 r_symmetry_xyhbond_nbd_refined 0.211 r_symmetry_nbd_other 0.188 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.168 r_metal_ion_refined 0.16 r_symmetry_nbd_refined 0.142 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.08 r_ncsr_local_group_1 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9817 Nucleic Acid Atoms Solvent Atoms 638 Heterogen Atoms 105
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling MOLREP phasing