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CSP1 M48L mutant with Iodide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FJD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 0.1 M Tris-Bicine pH 8.5 plus 12.5% v/v 2-methyl-2,4 pentanediol (racemic), 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 0.03 M sodium fluoride, 0.03 M sodium bromide and 0.03 M sodium iodide
Crystal Properties Matthews coefficient Solvent content 2.23 44.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.744 α = 90 b = 87.744 β = 90 c = 50.15 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 43.9 100 0.999 12 13.3 14827
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 1.736 1.872 0.695 0.793 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.95 43.872 14751 715 99.709 0.181 0.1786 0.1786 0.2297 0.2301 46.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.304 -2.304 4.609
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.708 r_dihedral_angle_4_deg 24.517 r_dihedral_angle_3_deg 15.549 r_lrange_it 7.923 r_scangle_it 7.567 r_scbond_it 5.544 r_mcangle_it 5.144 r_dihedral_angle_1_deg 4.8 r_mcbond_it 4.018 r_angle_refined_deg 1.511
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.708 r_dihedral_angle_4_deg 24.517 r_dihedral_angle_3_deg 15.549 r_lrange_it 7.923 r_scangle_it 7.567 r_scbond_it 5.544 r_mcangle_it 5.144 r_dihedral_angle_1_deg 4.8 r_mcbond_it 4.018 r_angle_refined_deg 1.511 r_nbtor_refined 0.301 r_nbd_refined 0.233 r_symmetry_nbd_refined 0.186 r_symmetry_xyhbond_nbd_refined 0.168 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.118 r_ncsr_local_group_1 0.092 r_metal_ion_refined 0.037 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1487 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction XDS data reduction MOLREP phasing BUSTER refinement Coot model building