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CSP1 M48L mutant without Iodide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FJD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 0.1 M Tris-Bicine pH 8.5 plus 14% v/v 2-methyl-2,4 pentanediol (racemic), 14% w/v PEG 1000, 14% w/v PEG 3350, 0.03 M MgCl2 and 0.03 M CaCl2
Crystal Properties Matthews coefficient Solvent content 2.1 41.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.579 α = 90 b = 41.755 β = 95.588 c = 53.739 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9762 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 38.17 99 0.117 0.16 0.108 0.989 6.7 3.2 14161
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.328 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 38.168 14161 671 98.91 0.223 0.2202 0.2203 0.2706 0.2703 39.092
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.728 0.013 -1.536 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.775 r_dihedral_angle_6_deg 14.616 r_dihedral_angle_2_deg 11.955 r_lrange_other 9.155 r_lrange_it 9.15 r_scangle_it 7.693 r_scangle_other 7.689 r_mcangle_it 5.382 r_mcangle_other 5.382 r_dihedral_angle_1_deg 5.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.775 r_dihedral_angle_6_deg 14.616 r_dihedral_angle_2_deg 11.955 r_lrange_other 9.155 r_lrange_it 9.15 r_scangle_it 7.693 r_scangle_other 7.689 r_mcangle_it 5.382 r_mcangle_other 5.382 r_dihedral_angle_1_deg 5.304 r_scbond_other 5.048 r_scbond_it 5.047 r_mcbond_it 3.471 r_mcbond_other 3.47 r_angle_refined_deg 1.616 r_angle_other_deg 0.552 r_nbd_refined 0.231 r_symmetry_xyhbond_nbd_refined 0.211 r_metal_ion_refined 0.204 r_symmetry_nbd_other 0.191 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.169 r_symmetry_nbd_refined 0.158 r_nbd_other 0.145 r_chiral_restr 0.083 r_symmetry_nbtor_other 0.075 r_ncsr_local_group_1 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1576 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 27
Software Software Software Name Purpose DIALS data reduction xia2 data reduction Aimless data scaling MOLREP phasing REFMAC refinement Coot model building