X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP289(0.2 M magnesium chloride hexahydrate, 0.1 M Tris-HCl pH 8.5, 30% PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.5752.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.4α = 90
b = 146.79β = 100.04
c = 64.31γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93PIXELDECTRIS EIGER X 9M2023-09-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.99989DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.845.3196.80.104000000000000010.130.9927.135188959
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.850.891.1530.301

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.845.3192649483199.060.161650.159850.19627RANDOM28.644
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.62-0.150.050.59
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.225
r_long_range_B_refined7.144
r_long_range_B_other7.116
r_dihedral_angle_1_deg6.56
r_scangle_other6.059
r_dihedral_angle_2_deg5.135
r_scbond_it3.935
r_scbond_other3.934
r_mcangle_it3.408
r_mcangle_other3.408
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.225
r_long_range_B_refined7.144
r_long_range_B_other7.116
r_dihedral_angle_1_deg6.56
r_scangle_other6.059
r_dihedral_angle_2_deg5.135
r_scbond_it3.935
r_scbond_other3.934
r_mcangle_it3.408
r_mcangle_other3.408
r_mcbond_it2.552
r_mcbond_other2.542
r_angle_refined_deg1.584
r_angle_other_deg0.52
r_chiral_restr0.08
r_bond_refined_d0.009
r_gen_planes_refined0.009
r_gen_planes_other0.003
r_bond_other_d0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7330
Nucleic Acid Atoms
Solvent Atoms458
Heterogen Atoms117

Software

Software
Software NamePurpose
REFMACrefinement
XSCALEdata scaling
xia2data reduction
PHASERphasing