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Heme-domain BM3 mutant T268E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 (0.2 M magnesium chloride hexahydrate, 0.1 M Tris-HCl pH 8.5, 30% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.57 52.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.4 α = 90 b = 146.79 β = 100.04 c = 64.31 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS EIGER X 9M 2023-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.99989 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.31 96.8 0.10400000000000001 0.13 0.992 7.13 5 188959
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 0.89 1.153 0.301
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 45.31 92649 4831 99.06 0.16165 0.15985 0.1701 0.19627 0.2036 RANDOM 28.644
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.62 -0.15 0.05 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.225 r_long_range_B_refined 7.144 r_long_range_B_other 7.116 r_dihedral_angle_1_deg 6.56 r_scangle_other 6.059 r_dihedral_angle_2_deg 5.135 r_scbond_it 3.935 r_scbond_other 3.934 r_mcangle_it 3.408 r_mcangle_other 3.408
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.225 r_long_range_B_refined 7.144 r_long_range_B_other 7.116 r_dihedral_angle_1_deg 6.56 r_scangle_other 6.059 r_dihedral_angle_2_deg 5.135 r_scbond_it 3.935 r_scbond_other 3.934 r_mcangle_it 3.408 r_mcangle_other 3.408 r_mcbond_it 2.552 r_mcbond_other 2.542 r_angle_refined_deg 1.584 r_angle_other_deg 0.52 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7330 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling xia2 data reduction PHASER phasing