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Heme-domain BM3 variant 21B3_F87V-A328F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.1 M ammonium tartrate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.42 49.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.82 α = 90 b = 127.2 β = 90 c = 64.44 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS EIGER X 16M 2016-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 137 99.4 0.075 0.08900000000000001 0.998 9.09 8.9 164294
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.87 1.92 1.308 1.558 0.39399999999999996
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.87 89.61 81782 4364 99.95 0.1722 0.17042 0.1808 0.20371 0.215 RANDOM 39.259
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 -1.58 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.177 r_long_range_B_refined 7.597 r_long_range_B_other 7.592 r_scangle_other 6.651 r_dihedral_angle_1_deg 6.533 r_dihedral_angle_2_deg 6.502 r_scbond_it 4.435 r_scbond_other 4.435 r_mcangle_it 4.126 r_mcangle_other 4.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.177 r_long_range_B_refined 7.597 r_long_range_B_other 7.592 r_scangle_other 6.651 r_dihedral_angle_1_deg 6.533 r_dihedral_angle_2_deg 6.502 r_scbond_it 4.435 r_scbond_other 4.435 r_mcangle_it 4.126 r_mcangle_other 4.126 r_mcbond_it 3.213 r_mcbond_other 3.212 r_angle_refined_deg 1.709 r_angle_other_deg 0.594 r_chiral_restr 0.088 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7332 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 102
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling xia2 data reduction PHASER phasing Aimless data scaling