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Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 R886G mutant with bound malate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8OJF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 293 30% w/v PEG400; 0.1M MES pH6.5; 0,1M NaAc
Crystal Properties Matthews coefficient Solvent content 4.48 72.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 242.38 α = 90 b = 242.38 β = 90 c = 396.04 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.9801 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.94 48.12 99.6 0.298 0.999 10.13 23.82 123364 76.1709538037
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.94 3.12 3.435 0.803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.9445137477 48.1168917258 1.33645412166 122656 6135 99.2041410547 0.205129681444 0.203169701804 0.2057 0.241772889651 0.2436 84.1228405692
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.5317316754 f_angle_d 0.714809552964 f_chiral_restr 0.043132049355 f_plane_restr 0.00606340719417 f_bond_d 0.00478347011211
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21803 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 126
Software Software Software Name Purpose MxCuBE data collection PHENIX refinement XDS data reduction XDS data scaling PHASER phasing