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human carbonic anhydrase I in complex with 2-((5-cyano-4-hydroxy-6-(p-tolyl)pyrimidin-2-yl)thio)-N-(4-sulfamoylphenyl)acetamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 296 28-31% PEG4000, 0.2 M Sodium acetate, 0.1 M Tris pH 9.0
Crystal Properties Matthews coefficient Solvent content 2.35 47.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.78 α = 90 b = 71.39 β = 90 c = 121.08 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.9718 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.606 60.613 100 0.084 0.088 0.999 18.37 11.66 71662
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.65 100 1.302 1.36 0.841 2.2 12.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.606 60.613 71662 3474 99.941 0.186 0.184 0.1968 0.2147 0.2268 24.637
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.582 2.262 -1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.317 r_dihedral_angle_4_deg 16.556 r_dihedral_angle_3_deg 14.438 r_dihedral_angle_1_deg 7.451 r_lrange_it 6.267 r_lrange_other 6.267 r_scangle_it 4.823 r_scangle_other 4.822 r_scbond_it 3.295 r_scbond_other 3.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.317 r_dihedral_angle_4_deg 16.556 r_dihedral_angle_3_deg 14.438 r_dihedral_angle_1_deg 7.451 r_lrange_it 6.267 r_lrange_other 6.267 r_scangle_it 4.823 r_scangle_other 4.822 r_scbond_it 3.295 r_scbond_other 3.295 r_mcangle_other 2.966 r_mcangle_it 2.965 r_mcbond_it 2.171 r_mcbond_other 2.168 r_angle_refined_deg 1.679 r_angle_other_deg 1.433 r_nbd_refined 0.21 r_symmetry_xyhbond_nbd_refined 0.203 r_nbd_other 0.198 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.17 r_symmetry_nbd_refined 0.164 r_xyhbond_nbd_refined 0.129 r_metal_ion_refined 0.089 r_chiral_restr 0.085 r_symmetry_nbtor_other 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4029 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing