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Ternary structure of 14-3-3s, C-RAF phosphopeptide (pS259) and compound 23 (1083848)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.86 57.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.685 α = 90 b = 89.262 β = 90 c = 116.969 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.885603 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 116.97 98.2 0.999 16.6 13.1 83028
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 0.727 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 70.96 78774 4186 98.2 0.18475 0.18397 0.19922 0.2377 RANDOM 24.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.84 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.292 r_long_range_B_refined 7.489 r_dihedral_angle_2_deg 7.455 r_long_range_B_other 7.395 r_dihedral_angle_1_deg 5.202 r_scangle_other 5.099 r_scbond_other 3.309 r_scbond_it 3.308 r_mcangle_it 2.827 r_mcangle_other 2.827
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.292 r_long_range_B_refined 7.489 r_dihedral_angle_2_deg 7.455 r_long_range_B_other 7.395 r_dihedral_angle_1_deg 5.202 r_scangle_other 5.099 r_scbond_other 3.309 r_scbond_it 3.308 r_mcangle_it 2.827 r_mcangle_other 2.827 r_mcbond_it 1.914 r_mcbond_other 1.914 r_angle_refined_deg 1.084 r_angle_other_deg 0.451 r_chiral_restr 0.052 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3812 Nucleic Acid Atoms Solvent Atoms 446 Heterogen Atoms 56
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing