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Structure of BRAF in Complex With Exarafenib (KIN-2787).
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other proprietary model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.1 M Hepes pH 6.7, 3.9 M NaCl, 0.10 M SCN
Crystal Properties Matthews coefficient Solvent content 4.39 71.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 206.778 α = 90 b = 206.778 β = 90 c = 149.382 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2020-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.999 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.979 146.214 93.9 0.965 6.9 15.9 29475
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.979 3.134 0.359
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.979 146.214 28954 522 88.586 0.225 0.2239 0.2261 0.2612 0.2581 56.222
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.089 -0.089 0.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.668 r_dihedral_angle_other_3_deg 29.04 r_dihedral_angle_3_deg 14.571 r_dihedral_angle_4_deg 12.905 r_dihedral_angle_6_deg 11.905 r_dihedral_angle_other_6_deg 11.286 r_lrange_it 6.932 r_lrange_other 6.932 r_dihedral_angle_1_deg 6.736 r_mcangle_it 4.655
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.668 r_dihedral_angle_other_3_deg 29.04 r_dihedral_angle_3_deg 14.571 r_dihedral_angle_4_deg 12.905 r_dihedral_angle_6_deg 11.905 r_dihedral_angle_other_6_deg 11.286 r_lrange_it 6.932 r_lrange_other 6.932 r_dihedral_angle_1_deg 6.736 r_mcangle_it 4.655 r_mcangle_other 4.655 r_scangle_it 3.59 r_scangle_other 3.59 r_mcbond_it 2.608 r_mcbond_other 2.606 r_scbond_it 1.934 r_scbond_other 1.934 r_angle_refined_deg 1.349 r_angle_other_deg 1.083 r_symmetry_nbd_refined 0.174 r_nbd_other 0.157 r_nbd_refined 0.154 r_symmetry_nbd_other 0.148 r_nbtor_refined 0.145 r_xyhbond_nbd_refined 0.122 r_symmetry_nbtor_other 0.071 r_ncsr_local_group_2 0.052 r_chiral_restr 0.05 r_ncsr_local_group_1 0.045 r_ncsr_local_group_3 0.033 r_symmetry_xyhbond_nbd_other 0.006 r_symmetry_xyhbond_nbd_refined 0.006 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6388 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing