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compound 1a bound KMT9 crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 1.2 M Na3Citrate, 0.1M Tris 7.5
Crystal Properties Matthews coefficient Solvent content 3.16 61.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.852 α = 90 b = 109.852 β = 90 c = 130.709 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2019-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.99987 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 47.613 99.9 0.153 0.157 0.035 1 19.8 39 93172
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.39 1.42 98.7 4.921 5.055 1.151 0.412 36.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.392 47.613 93096 4709 99.935 0.153 0.1521 0.1503 0.1794 0.1781 22.209
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.024 0.012 0.024 -0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.192 r_dihedral_angle_3_deg 14.814 r_rigid_bond_restr 13.811 r_scbond_it 9.624 r_scbond_other 9.621 r_dihedral_angle_2_deg 9.235 r_scangle_it 8.743 r_scangle_other 8.74 r_lrange_it 8.254 r_lrange_other 8.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.192 r_dihedral_angle_3_deg 14.814 r_rigid_bond_restr 13.811 r_scbond_it 9.624 r_scbond_other 9.621 r_dihedral_angle_2_deg 9.235 r_scangle_it 8.743 r_scangle_other 8.74 r_lrange_it 8.254 r_lrange_other 8.252 r_dihedral_angle_1_deg 6.776 r_mcangle_it 5.376 r_mcangle_other 5.374 r_mcbond_other 4.895 r_mcbond_it 4.829 r_angle_refined_deg 1.788 r_angle_other_deg 0.609 r_nbd_refined 0.235 r_nbd_other 0.233 r_symmetry_nbd_other 0.189 r_symmetry_nbd_refined 0.183 r_nbtor_refined 0.175 r_symmetry_xyhbond_nbd_refined 0.172 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.091 r_symmetry_nbtor_other 0.081 r_chiral_restr_other 0.017 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2418 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling PHASER phasing XDS data reduction