8QAJ | pdb_00008qaj

NMR solution structure of C-terminal domain of CDNF

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800
2	2D 1H-13C HSQC aliphatic	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800
3	2D 1H-13C HSQC aromatic	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800
4	3D HN(COCA)CB	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
6	3D HNCACB	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
7	3D HNCA	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
8	3D HN(CO)CA	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
9	3D HNCO	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
10	3D HCACO	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800
11	3D C(CO)NH	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
12	3D H(CCO)NH	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
13	2D (HB)CB(CGCD)HD	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
14	2D (HB)CB(CGCDCE)HE	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 600
15	3D HCCH-COSY	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800
16	3D HCCmHm-TOCSY	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800
17	3D 1H-13C NOESY	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800
18	3D 1H-15N NOESY	1 mM [U-13C; U-15N] C-CDNF, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	0.15 M	6.5	ambient atm	298	Varian INOVA 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
3	Varian	INOVA	800

NMR Refinement
Method	Details	Software
simulated annealing		CYANA
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	300
Conformers Submitted Total Number	20
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	data analysis	CcpNmr Analysis		CCPN
3	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
4	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman