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Human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol pH 7.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 28-31% PEG4000, 0.2 M Sodium acetate, 0.1 M Tris pH 8.5-9.0
Crystal Properties Matthews coefficient Solvent content 2.34 47.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.36 α = 90 b = 71.64 β = 90 c = 121.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 43.89 100 0.068 0.071 0.999 16.04 11.2 101912
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.43 1.46 100 0.946 1.001 0.878 2.31 9.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.43 43.89 101912 4998 99.913 0.194 0.1927 0.1979 0.2175 0.2225 23.904
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.987 2.829 -1.842
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.424 r_dihedral_angle_4_deg 18.1 r_dihedral_angle_3_deg 12.76 r_dihedral_angle_1_deg 7.507 r_lrange_other 5.439 r_lrange_it 5.432 r_scangle_it 4.474 r_scangle_other 4.473 r_scbond_it 3.099 r_scbond_other 3.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.424 r_dihedral_angle_4_deg 18.1 r_dihedral_angle_3_deg 12.76 r_dihedral_angle_1_deg 7.507 r_lrange_other 5.439 r_lrange_it 5.432 r_scangle_it 4.474 r_scangle_other 4.473 r_scbond_it 3.099 r_scbond_other 3.099 r_mcangle_it 2.665 r_mcangle_other 2.665 r_mcbond_it 2.029 r_mcbond_other 2.028 r_angle_refined_deg 1.818 r_angle_other_deg 1.483 r_nbd_refined 0.201 r_symmetry_nbd_refined 0.189 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.17 r_nbd_other 0.16 r_xyhbond_nbd_refined 0.134 r_symmetry_xyhbond_nbd_refined 0.113 r_metal_ion_refined 0.108 r_chiral_restr 0.094 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4020 Nucleic Acid Atoms Solvent Atoms 386 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing