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HUMAN PI4KIIIB IN COMPLEX WITH COVALENTLY BOUND INHIBITOR (COMPOUND 4)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 Sodium Formate
Crystal Properties Matthews coefficient Solvent content 2.21 44.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.211 α = 90 b = 67.553 β = 90 c = 106.932 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91587 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.506 57.111 87.2 0.039 0.044 0.02 0.999 16.5 4.7 43748 30.11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.506 1.62 64.5 0.647 0.754 0.381 0.766 1.6 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.506 20 41521 2188 63.78 0.18147 0.17923 0.1901 0.22386 0.232 RANDOM 28.475
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.03 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.16 r_long_range_B_refined 8.936 r_long_range_B_other 8.898 r_scangle_other 7.812 r_dihedral_angle_1_deg 5.65 r_dihedral_angle_2_deg 5.601 r_scbond_it 5.371 r_scbond_other 5.37 r_mcangle_it 5.309 r_mcangle_other 5.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.16 r_long_range_B_refined 8.936 r_long_range_B_other 8.898 r_scangle_other 7.812 r_dihedral_angle_1_deg 5.65 r_dihedral_angle_2_deg 5.601 r_scbond_it 5.371 r_scbond_other 5.37 r_mcangle_it 5.309 r_mcangle_other 5.309 r_mcbond_it 3.963 r_mcbond_other 3.961 r_angle_refined_deg 1.107 r_angle_other_deg 0.379 r_chiral_restr 0.056 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3124 Nucleic Acid Atoms Solvent Atoms 344 Heterogen Atoms 66
Software Software Software Name Purpose autoPROC data processing XDS data reduction Aimless data scaling STARANISO data scaling REFMAC phasing REFMAC refinement