8Q5B | pdb_00008q5b

Characterization of the zinc finger u-protein HVO_0758 from Haloferax volcanii: biological roles, zinc binding, and NMR solution structure

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
5	2D 1H-15N HSQC	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE NEO 900
6	2D 1H-13C HSQC	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800
7	3D HNCACB	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 600
13	3D HN(COCA)CB	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 600
12	3D HNCO	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 600
11	3D HN(CA)CO	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800
10	3D HNHA	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 600
9	3D HCCH-COSY	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800
8	3D HCCH-TOCSY	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800
18	3D 1H-15N TOCSY-HSQC	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800
17	3D (H)CC(CO)NH	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800
16	3D CC(CO)NH	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800
15	3D 1H-13C NOESY	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE NEO 900
14	3D 1H-15N NOESY	25 mM BisTris, 1000 mM NaCl, 100 uM ZnCl2, 5 mM 2-mercaptoethanol	95% H2O/5% D2O	1000 mM	7	1 atm	298	Bruker AVANCE III HD 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	900
2	Bruker	AVANCE III HD	800
3	Bruker	AVANCE III HD	600

NMR Refinement
Method	Details	Software
na		CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	NMRFAM-SPARKY	1.470	Lee, Tonelli, Markley
2	collection	TopSpin	4.1.0	Bruker Biospin
3	processing	TopSpin	4.1.0	Bruker Biospin
4	peak picking	NMRFAM-SPARKY	1.470	Lee, Tonelli, Markley
5	data analysis	NMRFAM-SPARKY	1.470	Lee, Tonelli, Markley
6	data analysis	TALOS-N		Cornilescu, Delaglio and Bax
7	data analysis	TENSOR2		Dosset, Marion, Blackledge
8	structure calculation	CYANA	3.98.13	Guntert, Mumenthaler and Wuthrich