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Structure of Whitewater Arroyo virus GP1 glycoprotein, solved at wavelength 2.75 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.0 mg/ml protein, 0.1 M HEPES-Na pH 7.5, and 0.05 M cadmium sulphate
Crystal Properties Matthews coefficient Solvent content 3.31 62.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.83 α = 90 b = 106.83 β = 90 c = 74.86 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 12M 2016-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I23 2.7552 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 46.3 97.2 0.1404 0.1428 0.02522 0.999 21.54 30.7 6783 102.96
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.848 0.567 0.88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.75 46.3 6431 352 97.46 0.25059 0.2492 0.2452 0.27618 0.272 RANDOM 117.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.3 1.15 2.3 -7.45
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 17.536 r_long_range_B_other 17.534 r_dihedral_angle_3_deg 14.249 r_scangle_other 12.238 r_mcangle_it 10.552 r_mcangle_other 10.548 r_scbond_it 8.327 r_scbond_other 8.239 r_mcbond_it 7.089 r_mcbond_other 7.08
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 17.536 r_long_range_B_other 17.534 r_dihedral_angle_3_deg 14.249 r_scangle_other 12.238 r_mcangle_it 10.552 r_mcangle_other 10.548 r_scbond_it 8.327 r_scbond_other 8.239 r_mcbond_it 7.089 r_mcbond_other 7.08 r_dihedral_angle_2_deg 5.757 r_dihedral_angle_1_deg 4.698 r_angle_refined_deg 1.176 r_angle_other_deg 0.379 r_chiral_restr 0.05 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1160 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling HKL2Map phasing