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Structure of salmonella effector SseK3, solved at wavelength 2.75 A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris pH 8.5, 0.2 M NaCl and 25% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.4 48.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.08 α = 90 b = 75.02 β = 109.52 c = 101.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 12M 2017-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I23 2.7552 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 49.93 77.31 0.1655 0.1693 0.03484 0.997 13.34 23 62053 36.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.175 1.796 0.3808 0.703 1.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 49.93 59075 2978 77.64 0.25387 0.25187 0.2571 0.29317 0.2999 RANDOM 42.995
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.8 -0.32 -3.71 5.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.383 r_dihedral_angle_3_deg 15.242 r_dihedral_angle_4_deg 12.944 r_long_range_B_other 10.63 r_long_range_B_refined 10.629 r_scangle_other 7.099 r_dihedral_angle_1_deg 5.751 r_mcangle_it 5.612 r_mcangle_other 5.612 r_scbond_it 4.509
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.383 r_dihedral_angle_3_deg 15.242 r_dihedral_angle_4_deg 12.944 r_long_range_B_other 10.63 r_long_range_B_refined 10.629 r_scangle_other 7.099 r_dihedral_angle_1_deg 5.751 r_mcangle_it 5.612 r_mcangle_other 5.612 r_scbond_it 4.509 r_scbond_other 4.509 r_mcbond_it 3.743 r_mcbond_other 3.74 r_angle_other_deg 1.372 r_angle_refined_deg 1.302 r_chiral_restr 0.059 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9756 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling HKL2Map phasing