X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP9.2293300mM TRIS 9.2 2.8M Ammonium Sulfate
Crystal Properties
Matthews coefficientSolvent content
2.7755.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.748α = 90
b = 178.369β = 90
c = 210.479γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MKirkpatrick-Baez2023-04-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.97918ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.889.181000.07911.46.113579121.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.84.011000.4954.16.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3.868.1321354368799.9040.2660.2610.3616209.703
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
31.519-11.45-20.069
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it24.007
r_lrange_other24.006
r_mcangle_it17.181
r_mcangle_other17.18
r_scangle_it14.056
r_scangle_other14.055
r_dihedral_angle_3_deg14.012
r_dihedral_angle_6_deg11.011
r_mcbond_it10.391
r_mcbond_other10.39
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it24.007
r_lrange_other24.006
r_mcangle_it17.181
r_mcangle_other17.18
r_scangle_it14.056
r_scangle_other14.055
r_dihedral_angle_3_deg14.012
r_dihedral_angle_6_deg11.011
r_mcbond_it10.391
r_mcbond_other10.39
r_scbond_it8.074
r_scbond_other8.063
r_dihedral_angle_1_deg7.5
r_dihedral_angle_2_deg2.302
r_angle_refined_deg0.894
r_angle_other_deg0.313
r_symmetry_nbd_refined0.256
r_nbd_other0.227
r_symmetry_nbd_other0.191
r_nbd_refined0.18
r_nbtor_refined0.179
r_xyhbond_nbd_refined0.164
r_symmetry_xyhbond_nbd_other0.144
r_symmetry_nbtor_other0.075
r_chiral_restr0.041
r_chiral_restr_other0.01
r_bond_refined_d0.004
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8696
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms160

Software

Software
Software NamePurpose
MxCuBEdata collection
iMOSFLMdata reduction
pointlessdata scaling
SCALAdata scaling
PHASERphasing
REFMACrefinement
Cootmodel building