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Dimeric RbdA EAL, in apo state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HV8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 294.15 100mM Tris and BICINE pH 9
34% (w/v) ethylene glycol and PEG 8000 mix
Crystal Properties Matthews coefficient Solvent content 3.22 61.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.4 α = 90 b = 65.72 β = 90 c = 172.25 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9789 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 46.04 93.5 0.059 0.999 15.9 4.6 31120 60.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 78 0.918 0.665 1.32 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.3 46.04 31120 1495 93.496 0.186 0.1839 0.1873 0.2324 0.2334 58.816
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.679 -1.625 -2.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.036 r_dihedral_angle_6_deg 15.899 r_lrange_other 10.317 r_lrange_it 10.307 r_dihedral_angle_2_deg 9.405 r_scangle_it 8.478 r_scangle_other 8.477 r_mcangle_it 6.122 r_mcangle_other 6.121 r_dihedral_angle_1_deg 6.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.036 r_dihedral_angle_6_deg 15.899 r_lrange_other 10.317 r_lrange_it 10.307 r_dihedral_angle_2_deg 9.405 r_scangle_it 8.478 r_scangle_other 8.477 r_mcangle_it 6.122 r_mcangle_other 6.121 r_dihedral_angle_1_deg 6.084 r_scbond_it 5.776 r_scbond_other 5.775 r_mcbond_it 4.19 r_mcbond_other 4.19 r_angle_refined_deg 1.551 r_angle_other_deg 0.531 r_symmetry_nbd_refined 0.266 r_nbd_other 0.237 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.195 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.182 r_symmetry_xyhbond_nbd_refined 0.159 r_ncsr_local_group_1 0.13 r_metal_ion_refined 0.113 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3957 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing Coot model building