X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP293100 mM Bis-Tris pH=7.0 150 mM AmSO4 Gradient 20-30% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.2244.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.532α = 90
b = 49.532β = 90
c = 132.12γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293PIXELDECTRIS PILATUS 6M2018-12-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.92DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.739.6699.860.063710.09010.9836.37218898
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.76199.290.392

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.739.661806893699.910.244530.242950.27665RANDOM29.633
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.34-2.344.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg22.698
r_dihedral_angle_4_deg16.994
r_dihedral_angle_3_deg14.06
r_long_range_B_refined6.901
r_long_range_B_other6.885
r_dihedral_angle_1_deg6.689
r_scangle_other5.545
r_mcangle_it3.594
r_mcangle_other3.593
r_scbond_it3.496
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg22.698
r_dihedral_angle_4_deg16.994
r_dihedral_angle_3_deg14.06
r_long_range_B_refined6.901
r_long_range_B_other6.885
r_dihedral_angle_1_deg6.689
r_scangle_other5.545
r_mcangle_it3.594
r_mcangle_other3.593
r_scbond_it3.496
r_scbond_other3.494
r_mcbond_other2.477
r_mcbond_it2.475
r_angle_refined_deg1.575
r_angle_other_deg1.322
r_chiral_restr0.067
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1161
Nucleic Acid Atoms
Solvent Atoms46
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
PHASERphasing