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MLLT1 in complex with compound 10a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other model generated with apo crystal
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 100 mM Bis-Tris pH=7.0
150 mM AmSO4
Gradient 20-30% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.22 44.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.532 α = 90 b = 49.532 β = 90 c = 132.12 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL DECTRIS PILATUS 6M 2018-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.92 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 39.66 99.86 0.06371 0.0901 0.983 6.37 2 18898
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.761 99.29 0.392
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 39.66 18068 936 99.91 0.24453 0.24295 0.2526 0.27665 0.2926 RANDOM 29.633
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.34 -2.34 4.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.698 r_dihedral_angle_4_deg 16.994 r_dihedral_angle_3_deg 14.06 r_long_range_B_refined 6.901 r_long_range_B_other 6.885 r_dihedral_angle_1_deg 6.689 r_scangle_other 5.545 r_mcangle_it 3.594 r_mcangle_other 3.593 r_scbond_it 3.496
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.698 r_dihedral_angle_4_deg 16.994 r_dihedral_angle_3_deg 14.06 r_long_range_B_refined 6.901 r_long_range_B_other 6.885 r_dihedral_angle_1_deg 6.689 r_scangle_other 5.545 r_mcangle_it 3.594 r_mcangle_other 3.593 r_scbond_it 3.496 r_scbond_other 3.494 r_mcbond_other 2.477 r_mcbond_it 2.475 r_angle_refined_deg 1.575 r_angle_other_deg 1.322 r_chiral_restr 0.067 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1161 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement XDS data reduction PHASER phasing