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fully recruited RfaH bound to E. coli transcription complex paused at ops site (not fully complementary scaffold; alternative state of RfaH)
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.428 f_angle_d 0.536 f_chiral_restr 0.039 f_plane_restr 0.003 f_bond_d 0.002
Sample transcription complex paused at ops site, bound to fully activated RfaH, assembled on not fully complementary nucleic acid scaffold Sample Components Transcription complex DNA and RNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 51791 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value 153 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 42
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 96000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.2.0 IMAGE ACQUISITION EPU 2.8 CTF CORRECTION cryoSPARC 3.2.0 MODEL FITTING Coot 0.9.8.1 INITIAL EULER ASSIGNMENT cryoSPARC 3.2.0 CLASSIFICATION cryoSPARC 3.2.0 RECONSTRUCTION cryoSPARC 3.2.0 MODEL REFINEMENT PHENIX 1.20_44591
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 849514