☰ Navigation Tabs
Structure of the Histidine Kinase CheA ATP-Binding domain in complex with compound ODDHK16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 294.15 PEG 8000 30% Ammonium acetate 0.6 M Sodium acetate 0.065 M ph 4.5
Crystal Properties Matthews coefficient Solvent content 1.91 35.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.966 α = 90 b = 59.12 β = 97.277 c = 67.064 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979510 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 66.524 98.8 0.129 0.154 0.083 0.994 9.2 6.7 18456
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.16 1.205 1.451 0.796 0.682 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.1 66.524 18443 946 98.605 0.188 0.185 0.1881 0.2455 0.2496 40.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.347 -1.54 0.805 0.906
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 19.276 r_dihedral_angle_3_deg 16.809 r_dihedral_angle_2_deg 16.638 r_dihedral_angle_6_deg 15.848 r_lrange_other 12.839 r_lrange_it 12.833 r_scangle_it 10.867 r_scangle_other 10.864 r_scbond_it 7.449 r_scbond_other 7.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 19.276 r_dihedral_angle_3_deg 16.809 r_dihedral_angle_2_deg 16.638 r_dihedral_angle_6_deg 15.848 r_lrange_other 12.839 r_lrange_it 12.833 r_scangle_it 10.867 r_scangle_other 10.864 r_scbond_it 7.449 r_scbond_other 7.447 r_dihedral_angle_1_deg 6.815 r_mcangle_it 5.276 r_mcangle_other 5.275 r_mcbond_it 4.145 r_mcbond_other 4.14 r_angle_refined_deg 2.169 r_angle_other_deg 0.831 r_symmetry_nbd_refined 0.371 r_symmetry_xyhbond_nbd_refined 0.365 r_nbd_other 0.275 r_xyhbond_nbd_other 0.265 r_nbd_refined 0.222 r_symmetry_nbd_other 0.175 r_nbtor_refined 0.169 r_ncsr_local_group_1 0.164 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.112 r_symmetry_nbtor_other 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2680 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling DIALS data reduction PHASER phasing