☰ Navigation Tabs
Structure of the Histidine Kinase CheA ATP-Binding domain in complex with compound ODDHK4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 294.15 PEG 8000 30% Ammonium acetate 0.6 M Sodium acetate 0.065 M ph 4.5
Crystal Properties Matthews coefficient Solvent content 1.91 35.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.088 α = 90 b = 59.182 β = 97.118 c = 66.766 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979510 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 66.251 99.3 0.071 0.084 0.045 0.998 15.1 6.6 24981
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.949 0.384 0.457 0.245 0.957 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 66.251 24966 1159 99.138 0.183 0.1804 0.1806 0.2285 0.2278 32.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.674 0.097 0.434 1.179
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.663 r_dihedral_angle_6_deg 16.289 r_dihedral_angle_2_deg 11.887 r_lrange_it 11.704 r_lrange_other 11.704 r_scangle_it 10.677 r_scangle_other 10.674 r_scbond_it 7.439 r_scbond_other 7.439 r_dihedral_angle_1_deg 5.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.663 r_dihedral_angle_6_deg 16.289 r_dihedral_angle_2_deg 11.887 r_lrange_it 11.704 r_lrange_other 11.704 r_scangle_it 10.677 r_scangle_other 10.674 r_scbond_it 7.439 r_scbond_other 7.439 r_dihedral_angle_1_deg 5.867 r_mcangle_it 5.375 r_mcangle_other 5.373 r_mcbond_it 4.17 r_mcbond_other 4.146 r_angle_refined_deg 2.045 r_angle_other_deg 0.671 r_symmetry_nbd_refined 0.327 r_symmetry_xyhbond_nbd_refined 0.309 r_nbd_other 0.283 r_nbd_refined 0.237 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.138 r_ncsr_local_group_1 0.123 r_chiral_restr 0.102 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2689 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing