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Full length structure of BpMIP with bound inhibitor NJS227.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y78
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.1 M BisTris pH 5.0
0.8 M Ammonium sulfate
PEG3350 14 %
Crystal Properties Matthews coefficient Solvent content 3.38 63.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.608 α = 90 b = 77.608 β = 90 c = 52.995 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.967 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 67.21 99.76 0.9 9.5 8 12368 30.77
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.092 0.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.02 67.21 11920 529 99.8 0.19582 0.19398 0.2241 0.23525 0.2487 RANDOM 33.938
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.02 0.03 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.586 r_dihedral_angle_3_deg 14.507 r_long_range_B_other 11.699 r_long_range_B_refined 11.648 r_dihedral_angle_1_deg 8.997 r_scangle_other 8.726 r_mcangle_it 6.576 r_mcangle_other 6.574 r_scbond_it 5.961 r_scbond_other 5.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 22.586 r_dihedral_angle_3_deg 14.507 r_long_range_B_other 11.699 r_long_range_B_refined 11.648 r_dihedral_angle_1_deg 8.997 r_scangle_other 8.726 r_mcangle_it 6.576 r_mcangle_other 6.574 r_scbond_it 5.961 r_scbond_other 5.956 r_mcbond_it 4.135 r_mcbond_other 4.135 r_angle_refined_deg 2.487 r_angle_other_deg 0.639 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 961 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction PHASER phasing