8P25

Solution structure of a chimeric U2AF2 RRM2 / FUBP1 N-Box


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
22D 1H-13C HSQC aromatic0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 900
15HBCBCGCDHD0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box100% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 900
16HBCBCGCDCEHE0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box100% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 900
32D 1H-13C HSQC aliphatic0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box100% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
43D CBCA(CO)NH0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
53D HNCACB0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
63D HNCO0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
73D HNCACO0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
83D H(CCO)NH0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
93D C(CO)NH0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 600
143D HNHA0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 500
103D HCCH-TOCSY0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box100% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 500
133D HCCH-TOCSY0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box100% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III 500
113D 1H-15N NOESY0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box90% H2O/10% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III HD 950
123D 1H-13C NOESY0.6 mM [U-100% 13C; U-100% 15N] Chimeric construct of U2AF2 linker-RRM2 and FUBP1 N-box100% D2O50mM NaCl mM6.51 atm298Bruker AVANCE III HD 950
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
4BrukerAVANCE III500
1BrukerAVANCE III600
2BrukerAVANCE III900
3BrukerAVANCE III HD950
NMR Refinement
MethodDetailsSoftware
simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number500
Conformers Submitted Total Number10
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementARIA2.3Linge, O'Donoghue and Nilges
2structure calculationCYANA3.98.15Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentNMRFAM-SPARKYLee W., Tonelli M., Markley J. L.
4peak pickingNMRFAM-SPARKYLee W., Tonelli M., Markley J. L.
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6processingTopSpinBruker Biospin
7geometry optimizationTALOS+Yang Shen, Frank Delaglio, Gabriel Cornilescu, and Ad Bax