☰ Navigation Tabs
Crystal structure of inactive TtCE16 in complex with acetate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ZTN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 NaI, PEG 3350, Bis-Tris propane
Crystal Properties Matthews coefficient Solvent content 2.52 51.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.542 α = 90 b = 82.542 β = 90 c = 101.073 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.42 41.27 100 1 15.7 9.7 75553
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.42 1.44 0.494
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.42 41.31 71542 3960 99.98 0.16792 0.16707 0.1704 0.18251 0.1869 RANDOM 23.577
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.13 0.26 -0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.279 r_dihedral_angle_4_deg 12.414 r_dihedral_angle_3_deg 11.979 r_dihedral_angle_1_deg 6.403 r_long_range_B_refined 5.19 r_long_range_B_other 5.184 r_scangle_other 3.804 r_scbond_it 2.609 r_scbond_other 2.608 r_mcangle_it 2.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.279 r_dihedral_angle_4_deg 12.414 r_dihedral_angle_3_deg 11.979 r_dihedral_angle_1_deg 6.403 r_long_range_B_refined 5.19 r_long_range_B_other 5.184 r_scangle_other 3.804 r_scbond_it 2.609 r_scbond_other 2.608 r_mcangle_it 2.064 r_mcangle_other 2.064 r_angle_refined_deg 1.597 r_mcbond_it 1.497 r_mcbond_other 1.484 r_angle_other_deg 1.469 r_chiral_restr 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2533 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 240
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing