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In situ subtomogram average of Prototype Foamy Virus Env hexamer of trimers
Refinement RMS Deviations Key Refinement Restraint Deviation r_mcbond_it 59.058 r_mcbond_other 59.055 r_scbond_it 53.854 r_scbond_other 53.852 r_dihedral_angle_3_deg 15.832 r_dihedral_angle_2_deg 9.047 r_dihedral_angle_1_deg 6.108 r_angle_refined_deg 1.582 r_angle_other_deg 0.988 r_chiral_restr 0.07
RMS Deviations Key Refinement Restraint Deviation r_mcbond_it 59.058 r_mcbond_other 59.055 r_scbond_it 53.854 r_scbond_other 53.852 r_dihedral_angle_3_deg 15.832 r_dihedral_angle_2_deg 9.047 r_dihedral_angle_1_deg 6.108 r_angle_refined_deg 1.582 r_angle_other_deg 0.988 r_chiral_restr 0.07 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Eastern chimpanzee simian foamy virus
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SUBTOMOGRAM AVERAGING Number of Particles 5697 Reported Resolution (Å) 10 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C6
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 2.62
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 2000 Maximum Defocus (nm) 4500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version VOLUME SELECTION Dynamo IMAGE ACQUISITION FEI tomography CTF CORRECTION Gctf MODEL FITTING UCSF ChimeraX FINAL EULER ASSIGNMENT RELION RECONSTRUCTION RELION MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION