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In situ cryoEM structure of Prototype Foamy Virus Env dimer of trimers
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 50.296 r_long_range_B_other 50.296 r_scangle_other 41.022 r_mcangle_it 36.851 r_mcangle_other 36.851 r_scbond_it 26.431 r_scbond_other 26.43 r_mcbond_it 24.429 r_mcbond_other 24.424 r_dihedral_angle_3_deg 15.821
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 50.296 r_long_range_B_other 50.296 r_scangle_other 41.022 r_mcangle_it 36.851 r_mcangle_other 36.851 r_scbond_it 26.431 r_scbond_other 26.43 r_mcbond_it 24.429 r_mcbond_other 24.424 r_dihedral_angle_3_deg 15.821 r_dihedral_angle_2_deg 9.05 r_dihedral_angle_1_deg 6.103 r_angle_refined_deg 1.581 r_angle_other_deg 1 r_chiral_restr 0.07 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Eastern chimpanzee simian foamy virus
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 324976 Reported Resolution (Å) 3.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 48
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 4000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO IMAGE ACQUISITION EPU CTF CORRECTION Gctf FINAL EULER ASSIGNMENT RELION RECONSTRUCTION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2103361