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Human Complement C3b in complex with Trypanosoma brucei ISG65.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold experimental model PDB 5FO7
Sample Complex of Human Complement C3b and T. brucei ISG65 Sample Components Human Complement C3b Trypanosoma brucei ISG65
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 481606 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5FO7) Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 49.9
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION SIMPLE 3 PARTICLE SELECTION cryoSPARC 3 PARTICLE SELECTION RELION 3.1 IMAGE ACQUISITION EPU CTF CORRECTION SIMPLE 3 MODEL FITTING UCSF ChimeraX INITIAL EULER ASSIGNMENT SIMPLE 3 INITIAL EULER ASSIGNMENT cryoSPARC 3 FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC 3 RECONSTRUCTION cryoSPARC 3 MODEL REFINEMENT ISOLDE MODEL REFINEMENT Coot
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 3824878