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GTPase HRAS in complex with Zn-cyclen under 500 MPa pressure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5P21
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 7.5 293 40 MM TRIS HCL, 10 MM MGCL2, 2 MM DTE,
26-30 % PEG-400
Crystal Properties Matthews coefficient Solvent content 1.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.612 α = 90 b = 38.612 β = 90 c = 159.814 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD RAYONIX SX-165mm 2015-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE CRISTAL 0.51035 SOLEIL CRISTAL
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 33.46 95.1 0.196 0.23 0.117 0.98 6.2 3.5 4948 25.89
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 93.2 0.918 1.082 0.56 0.429 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.5 32.73 1.34 4945 487 93.89 0.2375 0.2331 0.2336 0.2804 0.2787 RANDOM 24.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.6224 f_angle_d 0.4757 f_chiral_restr 0.0402 f_plane_restr 0.0036 f_bond_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1323 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 56
Software Software Software Name Purpose PHENIX refinement SCALA data scaling XDS data reduction MOLREP phasing