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Knockout of GMC-oxidoreductase genes reveals that functional redundancy preserves mimivirus essential functions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4Z24
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.228 f_angle_d 0.501 f_chiral_restr 0.046 f_plane_restr 0.005 f_bond_d 0.003
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 20899 Reported Resolution (Å) 4.2 Resolution Method FSC 0.5 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C3 Axial Rise 20.497 Angular Rotation 49.426
Map-Model Fitting and Refinement Id 1 (4Z24) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value 40.56 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 35.597
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 2800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 3.1 IMAGE ACQUISITION EPU 2.11.1 CTF CORRECTION CTFFIND 4.1.5 MODEL FITTING PHENIX 1.20.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 4.0 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 172431