8ONU

Solution structure of thanatin analogue 7 in complex with LptAm(Ab)1.0


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 600
22D 1H-13C HSQC aliphatic300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 600
32D 1H-13C HSQC aromatic300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 600
43D HNCO300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 600
53D HN(COCA)CB300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 600
63D HNCACB300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 600
73D 1H-15N NOESY300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 700
83D 1H-13C NOESY aliphatic300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 700
93D 1H-13C NOESY aromatic300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 700
103D HBHA(CO)NH300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 700
113D HCCH-TOCSY300 uM [U-13C; U-15N] A. baumannii lipopolysaccharide transport protein A (LptA) (33-164), 500 uM Thanatin analogue 7, 50 mM sodium phosphate, 150 mM sodium chloride90% H2O/10% D2O150 mM71 atm298Bruker AVANCE NEO 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO700
2BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsMOE
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationCYANA3.98Guntert, Mumenthaler and Wuthrich
2refinementMOE2020.09Chemical Computing Group ULC, 1010 Sherbooke St West, Suite #910, Montreal, QC, Canada, H3A 2R7, 2022
3chemical shift assignmentCARAKeller and Wuthrich
4peak pickingCcpNmr Analysis2.5CCPN