8ONS

TAF15 amyloid fold in atypical FTLD - Individual 1


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg9.152
r_long_range_B_refined7.101
r_long_range_B_other7.089
r_dihedral_angle_1_deg6.712
r_scangle_other5.251
r_mcangle_it3.892
r_mcangle_other3.891
r_scbond_it3.159
r_scbond_other3.155
r_mcbond_it2.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg9.152
r_long_range_B_refined7.101
r_long_range_B_other7.089
r_dihedral_angle_1_deg6.712
r_scangle_other5.251
r_mcangle_it3.892
r_mcangle_other3.891
r_scbond_it3.159
r_scbond_other3.155
r_mcbond_it2.25
r_mcbond_other2.225
r_angle_refined_deg0.827
r_angle_other_deg0.333
r_chiral_restr0.043
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_gen_planes_other0.001
r_bond_other_d
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
TAF15 atypical FTLD amyloid fold
Specimen Preparation
Sample Aggregation StateFILAMENT
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodHELICAL
Number of Particles95582
Reported Resolution (Å)1.97
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypeHELICAL
Axial SymmetryC1
Axial Rise4.78
Angular Rotation-2.12
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)800
Maximum Defocus (nm)2000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION