8OMT

X-ray structure of lysozyme obtained upon reaction with [VIVO(empp)2] (Structure C)

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293	2.0 M sodium formate 0.1 M Hepes buffer pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
1.93	36.38

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.13	α = 90
b = 77.13	β = 90
c = 37.26	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2021-11-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1.00	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.08	38.56	83.9	0.042	0.044	1	36.5	17.2		40727

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.08	1.1	34		0.404	0.469	0.829	2.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.097	38.56	40058	2002	86.111	0.118	0.1166	0.1444	15.966

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.084			0.084		-0.169

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.656
r_dihedral_angle_4_deg	20.517
r_dihedral_angle_3_deg	13.754
r_dihedral_angle_1_deg	6.197
r_rigid_bond_restr	5.011
r_lrange_it	4.641
r_lrange_other	4.604
r_scangle_it	4.049
r_scangle_other	4.002
r_scbond_it	3.358
r_scbond_other	3.355
r_angle_refined_deg	3.029
r_mcangle_other	1.843
r_mcangle_it	1.842
r_angle_other_deg	1.74
r_mcbond_it	1.441
r_mcbond_other	1.421
r_symmetry_xyhbond_nbd_refined	0.252
r_nbd_refined	0.247
r_symmetry_nbd_refined	0.216
r_nbd_other	0.213
r_xyhbond_nbd_refined	0.207
r_symmetry_nbd_other	0.197
r_nbtor_refined	0.189
r_chiral_restr	0.166
r_metal_ion_refined	0.127
r_symmetry_nbtor_other	0.095
r_symmetry_xyhbond_nbd_other	0.077
r_xyhbond_nbd_other	0.052
r_bond_refined_d	0.024
r_gen_planes_refined	0.013
r_gen_planes_other	0.003
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	184
Heterogen Atoms	56

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing