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Carbonic Anhydrase II in Complex with Steriod_Sulphamoyl VK4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YZX 6YZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.08 40.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.14 α = 90 b = 41.37 β = 104.39 c = 72.08 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2020-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 86.7 0.054000000000000006 0.061 0.998 12.54 3.4 41309
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 0.309 0.425 0.812
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 6YZX 1.4 35.59 38249 2014 84.52 0.16401 0.16268 0.165 0.19003 0.1924 RANDOM 15.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.15 0.14 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.354 r_dihedral_angle_4_deg 18.585 r_dihedral_angle_3_deg 11.735 r_dihedral_angle_1_deg 6.595 r_long_range_B_refined 4.524 r_long_range_B_other 4.524 r_scangle_other 2.529 r_mcangle_other 1.647 r_mcangle_it 1.645 r_scbond_it 1.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.354 r_dihedral_angle_4_deg 18.585 r_dihedral_angle_3_deg 11.735 r_dihedral_angle_1_deg 6.595 r_long_range_B_refined 4.524 r_long_range_B_other 4.524 r_scangle_other 2.529 r_mcangle_other 1.647 r_mcangle_it 1.645 r_scbond_it 1.602 r_scbond_other 1.601 r_angle_refined_deg 1.539 r_mcbond_it 1.024 r_mcbond_other 1.014 r_angle_other_deg 0.976 r_chiral_restr 0.093 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2051 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 28
Software Software Software Name Purpose XSCALE data scaling XDS data reduction REFMAC refinement MOLREP phasing