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Crystal structure of D-ProB26-DTriA analogue of human insulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4UNH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 293 0.3 M Tris/HCl pH 8.2, 0.6 M Na2SO4, 0.6 mM ZnAc
Crystal Properties Matthews coefficient Solvent content 1.92 36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 22.909 α = 90 b = 28.261 β = 90 c = 59.373 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC QUANTUM 315 2009-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0723 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.16 26 97.7 0.046 20.6 7.4 12934
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.16 1.18 0.217
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.17 21.38 12934 681 98.86 0.13579 0.13432 0.1341 0.16635 0.1661 RANDOM 13.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.02 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.931 r_dihedral_angle_1_deg 6.85 r_rigid_bond_restr 5.877 r_dihedral_angle_2_deg 4.409 r_long_range_B_refined 3.287 r_angle_refined_deg 1.978 r_scbond_it 1.471 r_mcangle_it 1.296 r_mcbond_it 0.964 r_chiral_restr 0.657
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.931 r_dihedral_angle_1_deg 6.85 r_rigid_bond_restr 5.877 r_dihedral_angle_2_deg 4.409 r_long_range_B_refined 3.287 r_angle_refined_deg 1.978 r_scbond_it 1.471 r_mcangle_it 1.296 r_mcbond_it 0.964 r_chiral_restr 0.657 r_gen_planes_refined 0.014 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 362 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing