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Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_33
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6YZX 6YZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.07 40.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.83 α = 90 b = 41.2 β = 103.77 c = 72.25 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 300K 2021-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.45187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 50 94.9 0.034 0.038 1 17.37 3.3 62780
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.28 0.38299999999999995 0.522 0.701
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 6YZX 1.25 39.47 59641 3139 94.91 0.13324 0.13159 0.1444 0.16515 0.1737 RANDOM 15.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.08 -0.21 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.615 r_dihedral_angle_4_deg 18.542 r_dihedral_angle_3_deg 11.028 r_dihedral_angle_1_deg 7.127 r_long_range_B_refined 2.724 r_long_range_B_other 2.424 r_scangle_other 2.133 r_rigid_bond_restr 2.078 r_scbond_other 1.693 r_scbond_it 1.691
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.615 r_dihedral_angle_4_deg 18.542 r_dihedral_angle_3_deg 11.028 r_dihedral_angle_1_deg 7.127 r_long_range_B_refined 2.724 r_long_range_B_other 2.424 r_scangle_other 2.133 r_rigid_bond_restr 2.078 r_scbond_other 1.693 r_scbond_it 1.691 r_mcangle_it 1.666 r_mcangle_other 1.666 r_angle_refined_deg 1.613 r_angle_other_deg 1.589 r_mcbond_it 1.4 r_mcbond_other 1.38 r_chiral_restr 0.085 r_gen_planes_refined 0.011 r_bond_refined_d 0.01 r_bond_other_d 0.009 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2014 Nucleic Acid Atoms Solvent Atoms 269 Heterogen Atoms 27
Software Software Software Name Purpose PHENIX refinement XSCALE data scaling XDS data reduction MOLREP phasing