☰ Navigation Tabs
Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.04 39.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.667 α = 90 b = 41.046 β = 103.73 c = 71.546 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL RIGAKU HyPix-6000HE 2022-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.45187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 26.52 99.6 0.06 0.067 0.03 0.998 13.5 4.2 46311
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 98.1 0.395 0.481 0.27 0.786 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 26.54 44023 2271 99.51 0.1639 0.1628 0.1628 0.1847 0.1843 RANDOM 12.614
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.14 -0.23 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.166 r_dihedral_angle_4_deg 17.99 r_dihedral_angle_3_deg 11.709 r_dihedral_angle_1_deg 7.186 r_long_range_B_refined 3.725 r_long_range_B_other 3.549 r_scangle_other 2.092 r_angle_refined_deg 1.637 r_mcangle_other 1.588 r_mcangle_it 1.587
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.166 r_dihedral_angle_4_deg 17.99 r_dihedral_angle_3_deg 11.709 r_dihedral_angle_1_deg 7.186 r_long_range_B_refined 3.725 r_long_range_B_other 3.549 r_scangle_other 2.092 r_angle_refined_deg 1.637 r_mcangle_other 1.588 r_mcangle_it 1.587 r_angle_other_deg 1.52 r_scbond_it 1.37 r_scbond_other 1.37 r_mcbond_it 0.979 r_mcbond_other 0.971 r_chiral_restr 0.235 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.005 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2019 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement Aimless data scaling CrysalisPro data reduction MOLREP phasing