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Carbonic Anhydrase IX like mutant in Complex with Steriod_Sulphamoyl inhibitor AKI_1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 291 1.6 M sodium citrate, 50 mM Tris-H2SO4
Crystal Properties Matthews coefficient Solvent content 2.07 40.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.87 α = 90 b = 41.21 β = 103.85 c = 72.2 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 50 99.5 0.071 0.077 0.9990000000000001 10.76 6.3 217683
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.08 2.033 2.338 0.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.05 40.65 109165 2228 99.96 0.14344 0.14289 0.1458 0.17044 0.1742 RANDOM 14.184
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.11 -0.31 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.468 r_dihedral_angle_4_deg 17.435 r_dihedral_angle_3_deg 10.731 r_dihedral_angle_1_deg 7.456 r_rigid_bond_restr 2.348 r_angle_refined_deg 1.708 r_angle_other_deg 1.616 r_chiral_restr 0.095 r_bond_refined_d 0.011 r_gen_planes_refined 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.468 r_dihedral_angle_4_deg 17.435 r_dihedral_angle_3_deg 10.731 r_dihedral_angle_1_deg 7.456 r_rigid_bond_restr 2.348 r_angle_refined_deg 1.708 r_angle_other_deg 1.616 r_chiral_restr 0.095 r_bond_refined_d 0.011 r_gen_planes_refined 0.011 r_bond_other_d 0.01 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2009 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction MLPHARE phasing