X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP62910.1 M SPG buffer, 25 % w/v PEG 1500
Crystal Properties
Matthews coefficientSolvent content
2.4249.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.562α = 90
b = 179.321β = 90
c = 207.897γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.88561DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5164.641000.2180.2340.0840.98867.7162833
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.512.581002.2682.4270.860.4517.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.5164.64154712794399.90.221750.220840.23921RANDOM58.947
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.7-1.240.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.792
r_dihedral_angle_3_deg14.203
r_dihedral_angle_4_deg11.351
r_dihedral_angle_1_deg7.606
r_long_range_B_refined5.314
r_long_range_B_other5.31
r_mcangle_it2.824
r_mcangle_other2.824
r_scangle_other1.983
r_mcbond_it1.567
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.792
r_dihedral_angle_3_deg14.203
r_dihedral_angle_4_deg11.351
r_dihedral_angle_1_deg7.606
r_long_range_B_refined5.314
r_long_range_B_other5.31
r_mcangle_it2.824
r_mcangle_other2.824
r_scangle_other1.983
r_mcbond_it1.567
r_mcbond_other1.567
r_angle_refined_deg1.303
r_angle_other_deg1.13
r_scbond_it1.115
r_scbond_other1.115
r_chiral_restr0.058
r_bond_refined_d0.011
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms34683
Nucleic Acid Atoms
Solvent Atoms445
Heterogen Atoms504

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction