8ODQ

SufS-SufU complex from Mycobacterium tuberculosis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.72930.4 M KNO3, 16% PEG 3350, 0.1M MOPS pH 6.7
Crystal Properties
Matthews coefficientSolvent content
2.7154.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.25α = 92.4
b = 75.553β = 109.57
c = 75.602γ = 99.71
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6Mdouble SI(111) monochromator2022-02-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.9763ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.655095.70.1040.9967.472.9147290129.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.7592.40.5410.962.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6548.72140036720995.790.180560.178860.21373RANDOM27.033
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.760.95-0.522.280.77-1.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.018
r_dihedral_angle_4_deg14.675
r_dihedral_angle_3_deg14.033
r_dihedral_angle_1_deg6.691
r_long_range_B_refined6.205
r_long_range_B_other5.971
r_scangle_other4.204
r_scbond_it2.876
r_scbond_other2.874
r_mcangle_it2.826
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.018
r_dihedral_angle_4_deg14.675
r_dihedral_angle_3_deg14.033
r_dihedral_angle_1_deg6.691
r_long_range_B_refined6.205
r_long_range_B_other5.971
r_scangle_other4.204
r_scbond_it2.876
r_scbond_other2.874
r_mcangle_it2.826
r_mcangle_other2.826
r_mcbond_it2.102
r_mcbond_other2.101
r_angle_refined_deg1.606
r_angle_other_deg1.459
r_chiral_restr0.082
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_gen_planes_other0.007
r_bond_other_d0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8451
Nucleic Acid Atoms
Solvent Atoms1081
Heterogen Atoms69

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing