8LDH

REFINED CRYSTAL STRUCTURE OF DOGFISH M4 APO-LACTATE DEHYDROGENASE


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.8857.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 146.8α = 90
b = 146.8β = 90
c = 155.4γ = 90
Symmetry
Space GroupF 4 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.80.191
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor22.1
p_planar_tor4.3
p_multtor_nbd0.292
p_xhyhbond_nbd0.287
p_singtor_nbd0.218
p_bond_d0.17
p_chiral_restr0.136
p_planar_d0.04
p_angle_d0.034
p_plane_restr0.005
RMS Deviations
KeyRefinement Restraint Deviation
p_staggered_tor22.1
p_planar_tor4.3
p_multtor_nbd0.292
p_xhyhbond_nbd0.287
p_singtor_nbd0.218
p_bond_d0.17
p_chiral_restr0.136
p_planar_d0.04
p_angle_d0.034
p_plane_restr0.005
p_angle_deg
p_hb_or_metal_coord
p_mcbond_it
p_mcangle_it
p_scbond_it
p_scangle_it
p_xyhbond_nbd
p_orthonormal_tor
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2545
Nucleic Acid Atoms
Solvent Atoms281
Heterogen Atoms26

Software

Software
Software NamePurpose
PROLSQrefinement