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PKS domains-fused AmpC EC2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5GGW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 295 20mM MgCl2, 100mM sodium citrate/citric acid, and 40% polyethylene glycol 400
Crystal Properties Matthews coefficient Solvent content 3.86 68.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.47 α = 90 b = 248.86 β = 90 c = 153.7 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2022-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.98 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.76998285856 30 99.8 0.999 15.6 13.9 53091 80.2579496529
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.77 2.84 0.753
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.76998285856 29.3686176065 1.35607744589 53087 2655 99.9472841947 0.230729608144 0.228881857788 0.2316 0.265517589743 0.2697 78.9844387744
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.0404215468 f_angle_d 0.609408249909 f_chiral_restr 0.0428533712628 f_plane_restr 0.00489459432519 f_bond_d 0.0024812198668
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9464 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose phenix.refine refinement PHENIX refinement PHASER phasing XDS data reduction XDS data scaling