☰ Navigation Tabs
Crystal structure of sulfur transferase from Frondihabitans sp. PAMC28461 crystallized in the P1 space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 10% w/v PEG 20,000, 20% v/v PEG MME 550, 0.03 M of magnesium chloride and calcium chloride, and 0.1 M MOPS/HEPES-Na pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.32 47.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.25 α = 89.063 b = 61.6 β = 76.302 c = 74.08 γ = 79.637
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2016-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9794 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.91 96.5 0.072 0.99 3.6 3.6 38820
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.923
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 28.192 38819 1935 96.457 0.218 0.2152 0.2208 0.269 0.2687 24.55
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.025 0.071 -0.083 -0.012 -0.034 -0.013
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.821 r_dihedral_angle_4_deg 16.966 r_dihedral_angle_3_deg 13.918 r_dihedral_angle_1_deg 7.77 r_lrange_it 5.019 r_lrange_other 4.993 r_scangle_it 3.337 r_scangle_other 3.337 r_mcangle_it 2.935 r_mcangle_other 2.935
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.821 r_dihedral_angle_4_deg 16.966 r_dihedral_angle_3_deg 13.918 r_dihedral_angle_1_deg 7.77 r_lrange_it 5.019 r_lrange_other 4.993 r_scangle_it 3.337 r_scangle_other 3.337 r_mcangle_it 2.935 r_mcangle_other 2.935 r_scbond_it 2.172 r_scbond_other 2.171 r_mcbond_it 1.997 r_mcbond_other 1.996 r_angle_refined_deg 1.523 r_angle_other_deg 1.308 r_symmetry_nbd_refined 0.274 r_symmetry_xyhbond_nbd_refined 0.226 r_nbd_refined 0.206 r_symmetry_nbd_other 0.186 r_xyhbond_nbd_refined 0.169 r_nbtor_refined 0.167 r_nbd_other 0.147 r_symmetry_xyhbond_nbd_other 0.125 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4610 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing